Common Molecular Hamiltonians
A molecule can be described with all its electrons and nuclei, with nuclei moving on an electronic potential-energy surface, or with a small matrix of selected rotational and spin levels. Each description answers different questions. This reference compares their operators, assumptions, units, and angular-momentum conventions.
The key physical connection is that electronic binding determines a potential for nuclear motion. Vibration and rotation then emerge from that motion; they are not exactly independent because rotating a stretched molecule costs less energy than rotating a compact one at the same angular momentum.
Required background. Molecular Hamiltonian introduces the particle coordinates and Coulomb interactions. Helpful background. Atomic units explains the Hartree form used below. Brown and Carrington (2003) develop the spectroscopic reductions and spin conventions in detail.
Nonrelativistic Coulomb Hamiltonian
Section titled “Nonrelativistic Coulomb Hamiltonian”Let electrons have coordinates , and let nuclei have coordinates , charges , and masses . In SI units, the spin-free point-particle Hamiltonian is
Every coordinate is dynamical. In particular, the internuclear term is an operator on nuclear coordinates; it becomes a geometry-dependent scalar only in a clamped-nuclei electronic problem.
In Hartree atomic units,
where every is expressed in electron-mass units. Atomic Units gives the unit dictionary and dimensional-restoration checks.
This spin-independent model omits relativistic, radiative, finite-nuclear-size, and applied-field effects. Spin still constrains the exchange symmetry of identical electrons and nuclei. An environment or quantized radiation field requires additional degrees of freedom.
Remove overall translation
Section titled “Remove overall translation”For an isolated molecule with no external field,
with
The internal Hamiltonian contains reduced masses and, depending on the coordinate choice, mass-polarization or other kinetic cross terms. Deleting a center-of-mass coordinate from the printed laboratory equation does not by itself derive .
This separation is exact for a translationally invariant isolated Hamiltonian. Homogeneous magnetic fields require more careful pseudomomentum and gauge treatment, especially for a charged molecule.
Born–Oppenheimer Electronic Hamiltonian
Section titled “Born–Oppenheimer Electronic Hamiltonian”Two surface conventions
Section titled “Two surface conventions”At fixed nuclear geometry , define the electronic-only operator in atomic units by
Solve
The corresponding potential-energy surface is
where
Another common convention includes directly:
Both conventions are correct. The error is to diagonalize the second operator and then add again, or to diagonalize the first and forget it.
What is fixed and what remains quantum
Section titled “What is fixed and what remains quantum”During the electronic eigenproblem, is a parameter. The nuclei have not been declared classical forever; their quantum kinetic energy is restored in the nuclear equation. “Clamped nuclei” names an auxiliary problem, not a statement that a molecular eigenstate contains motionless nuclei.
At a fixed geometry, point-group labels and an electronic spin multiplicity may classify . Over nuclear configuration space, labels can change, surfaces can approach one another, and a single adiabatic state may not provide a globally smooth basis.
Electronic Channels and Nuclear Motion
Section titled “Electronic Channels and Nuclear Motion”A complete geometry-dependent electronic basis gives
The expansion is exact for a complete electronic basis (including any required continuum); keeping only finitely many channels is a truncation. Acting with nuclear kinetic energy generates the coupled equations
where contains diagonal and off-diagonal derivative couplings. In simple Cartesian notation,
with
The one-surface leading Hamiltonian is
It is obtained by neglecting couplings to other electronic channels and the geometry dependence of inside . Adiabatic diagonal corrections, geometric vector potentials, and nonadiabatic couplings can be restored systematically, but their form depends on representation and gauge.
Nonadiabatic Coupling develops derivative couplings, adiabatic and diabatic representations, avoided crossings, and coupled nuclear dynamics.
One-surface validity
Section titled “One-surface validity”Compare the derivative coupling acting on the nuclear wavepacket with the electronic energy gap over the region that packet samples. The operators contain derivatives, so their unrestricted operator norm is not a finite universal coupling constant. Faster nuclear motion can produce stronger channel mixing even for the same pair of surfaces.
A large gap at equilibrium alone is insufficient: a wavepacket may reach an avoided crossing or conical intersection elsewhere. Many individually small couplings can also accumulate; see the combined-coupling example. Diagonal geometric corrections and Berry phases may matter even when transitions to other surfaces are rare.
Nuclear Vibrational Hamiltonians
Section titled “Nuclear Vibrational Hamiltonians”General internal-coordinate form
Section titled “General internal-coordinate form”For internal coordinates with mass metric , a coordinate-invariant kinetic operator has the schematic Laplace–Beltrami form
where
The precise internal measure, removal of translation and rotation, body-fixed frame, and any ordering or pseudopotential terms must be derived for the selected coordinates. Replacing this operator by a Cartesian Laplacian in curvilinear coordinates is generally wrong.
Diatomic radial Hamiltonian
Section titled “Diatomic radial Hamiltonian”For a diatomic on an isolated electronic surface, neglecting nonadiabatic and diagonal geometric corrections, the reduced radial equation at rotational quantum number is
where
Here the radial wavefunction is , so its normalization uses . States with nonzero electronic angular momentum need the corresponding rotational and electronic couplings; the displayed scalar equation is not their general Hamiltonian.
Setting gives the pure radial vibrational problem. Freezing gives the leading rigid rotor. The full equation already contains rotation–vibration coupling because the centrifugal term depends on the vibrational coordinate.
Vibrations of Diatomics develops anharmonic potentials, isotope scaling, Morse levels, and infrared transition moments.
Harmonic normal modes
Section titled “Harmonic normal modes”Near a stable equilibrium, mass-weighted normal coordinates reduce the quadratic vibrational Hamiltonian to
with energies
For nuclei,
The normal-mode basis is a local quadratic approximation. Anharmonicity, large-amplitude motion, resonances, tunneling, and vibronic coupling require a larger nuclear model. Normal Modes of Polyatomics develops the mass-weighted Hessian, symmetry classification, and activity criteria.
Rigid Rotor Hamiltonians
Section titled “Rigid Rotor Hamiltonians”General top
Section titled “General top”For a nonlinear molecule at fixed reference geometry, let be the inertia tensor about the center of mass. Neglecting shape motion gives
In principal axes,
If , , and are frequency constants,
where
Rotational constants in energy or wavenumber units differ by factors of or .
Rotor classes
Section titled “Rotor classes”| Model | Moment relation | Spectral consequence |
|---|---|---|
| linear rotor | , | one scalar constant and a ladder |
| spherical top | orientation has extra degeneracy | |
| prolate symmetric top | exact body-axis projection | |
| oblate symmetric top | exact symmetry-axis projection | |
| asymmetric top | no exact and matrix diagonalization for each |
For a linear molecule the axial moment is zero, so do not insert its singular inertia tensor into the inverse above. There are only two physical orientational coordinates for an ideal linear rotor. For a closed-shell state,
For open-shell molecules, usually includes electronic spin while does not, so the spin-free rotational term is often written . Rotations of Molecules develops the conventions, rotor classes, centrifugal distortion, and spectroscopic inference in depth.
Vibration–Rotation Hamiltonians
Section titled “Vibration–Rotation Hamiltonians”The coupling is kinematic
Section titled “The coupling is kinematic”In a semirigid polyatomic molecule, the inverse inertia tensor changes with internal coordinates. In a molecule-fixed frame, a useful schematic form is
Here is a coordinate-dependent inverse inertia tensor, is vibrational angular momentum, and denotes convention-dependent ordering or pseudopotential terms. An Eckart frame suppresses avoidable local coupling near a reference geometry; it does not remove physical Coriolis coupling.
Diatomic effective form
Section titled “Diatomic effective form”For a simple closed-shell diatomic, a common wavenumber expansion is
The leading truncated form is
with
The mixed coefficients in the Dunham expansion and the dependence of describe rotation–vibration coupling. This polynomial is a low-energy expansion: the truncated tends to for arbitrarily large when , so it cannot predict the entire high- spectrum. Near dissociation, solve an appropriate nuclear-motion model.
In the illustrative harmonic bond model, , where and . Increasing angular momentum shifts the minimum to larger separation. The harmonic potential is a local model; these curves do not describe dissociation.
Effective Hamiltonians are representation dependent
Section titled “Effective Hamiltonians are representation dependent”For semirigid asymmetric tops, Watson and reductions remove redundant centrifugal-distortion parameters by different contact transformations. They predict the same spectrum to the retained order when used consistently, but their fitted constants need not agree term by term. Axis representations and sign conventions must also match.
Rovibrational Coupling develops Dunham organization, Coriolis effects, branches, combination differences, branch heads, and fit diagnostics.
Angular-Momentum Dictionary
Section titled “Angular-Momentum Dictionary”No molecular spin Hamiltonian is portable until its angular momenta are defined. A common diatomic convention is:
| Symbol | Meaning |
|---|---|
| end-over-end nuclear rotation | |
| total electronic orbital angular momentum | |
| total electronic spin | |
| total angular momentum excluding electronic spin and nuclear spin; often | |
| total angular momentum excluding nuclear spin | |
| spin of nucleus | |
| coupled resultant of the nuclear spins | |
| total angular momentum including nuclear spin, usually |
For a closed-shell state, and the simple rotational labels and coincide. In open-shell states, they do not. Some authors use for bare rotation and others use it for all angular momentum except spin; the operator definitions, rather than the letter alone, are authoritative.
Fine and Spin–Rotation Terms
Section titled “Fine and Spin–Rotation Terms”Electronic spin couplings
Section titled “Electronic spin couplings”Within a selected electronic manifold, common effective fine-structure operators include
The terms represent, respectively:
- effective spin–orbit coupling in an axial basis;
- electron spin–spin or zero-field splitting;
- electronic spin–rotation coupling.
Under this displayed normalization, and the components of and carry energy units. If the constants are quoted in hertz, divide the entire Hamiltonian by .
For an idealized diatomic with constants in frequency units, a frequently used leading model is
This compact form is state-specific. Centrifugal corrections, vibrational dependence, spin–orbit mixing with other electronic states, and hyperfine terms may be required at higher resolution.
Electronic versus nuclear spin–rotation
Section titled “Electronic versus nuclear spin–rotation”The electronic term is
The nuclear spin–rotation term is instead
The first can exist only when . The second can split a closed-shell rotational level when and . Its isotropic first-order contribution vanishes in an level. Both are often called “spin–rotation,” so the spin operator must always be printed.
Molecular Hyperfine Hamiltonian
Section titled “Molecular Hyperfine Hamiltonian”At leading electromagnetic multipole order, a schematic molecular hyperfine Hamiltonian is
The displayed normalization is schematic: authors distribute factors of , , nuclear moments, and tensor normalizations differently.
| Interaction | Physical source | Required angular momentum |
|---|---|---|
| Fermi contact | electron spin density at a nucleus | , |
| electron–nuclear dipolar | anisotropic magnetic dipole coupling | , |
| nuclear electric quadrupole | nuclear quadrupole with molecular electric-field gradient | |
| nuclear spin–rotation | nuclear magnetic moment with field generated by molecular rotation | |
| nuclear spin–spin | magnetic coupling between nuclei | at least two nonzero nuclear spins |
Nuclear spin–orbit and higher nuclear multipoles may also enter specialized models. The nuclear electric-quadrupole term is a rank-2 tensor interaction; the familiar scalar constant is obtained only after choosing molecular axes and a tensor convention.
State dependence and vibrational averaging
Section titled “State dependence and vibrational averaging”Hyperfine constants are generally functions of geometry. A constant reported for vibrational level represents a matrix element such as
possibly after further electronic-state projection and effective transformations. It is not automatically the value at .
The NIST diatomic compilation uses separate constants for nuclear quadrupole, nuclear spin–rotation, and nuclear spin–spin effects. The NIST compilation also displays the electron spin–spin and electron spin–rotation terms. These provide explicit operator conventions for comparing reported constants.
External-Field Additions
Section titled “External-Field Additions”For a neutral molecule in static, spatially slowly varying fields, common leading terms within a selected electronic manifold are
Here represents the response of states omitted from the model, usually remote electronic states. Do not include the same rotational or electronic response both in and through explicit dipole-coupled states. For a far-off-resonant monochromatic field with real peak amplitude , the cycle-averaged scalar shift is , not the static with the peak amplitude inserted unchanged.
The molecular dipole and polarizability are body-fixed tensors, while the applied fields are usually specified in the laboratory frame. Direction cosines or spherical tensors connect the two. A static electric field mixes opposite-parity rotor states; a magnetic field can decouple angular momenta that were useful at zero field.
For charged molecules, center-of-mass and internal electric or magnetic couplings require an explicit gauge and coordinate derivation. A neutral internal dipole is origin independent, while an ionic dipole is not unless the center-of-mass convention is fixed.
Symmetries and Good Labels
Section titled “Symmetries and Good Labels”| Model | Exact or robust labels | Labels that are conditional |
|---|---|---|
| isolated spin-free Coulomb molecule | total spatial angular momentum, parity, permutation symmetry | equilibrium point group and body-fixed geometry |
| fixed-geometry electronic problem | geometry point-group irrep, electron exchange symmetry | energy ordering as a state label |
| one scalar surface for a nondegenerate electronic state | total rotational symmetry and permutation–inversion symmetry, when preserved by the reduction | separate vibrational and rotational quanta; electronic geometric phases can require a richer model |
| harmonic normal modes | mode occupation within the quadratic model | local-mode character outside the harmonic region |
| linear or symmetric rigid rotor | and an allowed projection label | vibrational state independence of constants |
| asymmetric rotor | , , parity, exact molecular symmetry | and as exact projections |
| field-free spin-resolved model | and parity when all retained terms are rotational scalars | intermediate couplings such as , , or the resultant |
| molecule in a dc field | projection on the field axis under axial symmetry | zero-field parity and coupled angular momenta |
The individual nuclear spins are fixed properties of the isotopes when nuclear internal excitation is excluded; the resultant of several nuclear spins need not be conserved. Exact labels depend on the Hamiltonian. When an interaction is added, states with the same exact symmetry may mix and their approximate labels may exchange character.
Molecular Symmetry develops point groups, irreducible representations, permutation–inversion issues, and spectroscopic selection rules.
Perturb or Diagonalize
Section titled “Perturb or Diagonalize”After rephasing the basis to make the coupling real and positive, write
Its lower eigenstate is , with
Nondegenerate perturbation theory requires . A small interaction measured in megahertz can therefore cause large mixing near a degeneracy. First separate exact symmetry sectors, then keep the coupled near-degenerate states in the same matrix. When eliminating states, transform the observables too. Refitted constants may be needed if the old effective constants already included the eliminated interaction.
Unit Conventions
Section titled “Unit Conventions”The same operator may be reported in four common forms.
| Printed object | Eigenvalue unit | Evolution factor |
|---|---|---|
| joule, electronvolt, or Hartree | ||
| hertz | ||
| radians per second | ||
| inverse length, usually | convert through |
Thus
For a moment of inertia ,
Never insert a hertz-valued into an energy Hamiltonian without multiplying by . Constants and Conversions gives the corresponding , , electronvolt, kelvin, and angular-frequency conversions.
Common pitfalls
Section titled “Common pitfalls”Using a fitted constant outside its range. A rotational or hyperfine constant can be vibrationally averaged and can absorb other state couplings. It need not equal its value at equilibrium. Check the isotope, vibrational state, and fitted quantum-number range before extrapolating.
Reading an equilibrium point group as the whole molecular symmetry. Point-group labels classify the fixed-geometry electronic problem. A freely rotating or tunneling molecule also needs rotational and permutation–inversion symmetry; see Molecular symmetry.
Comparing incompatible constants. The operators, units, axis convention, and effective-Hamiltonian reduction must match. Two equivalent reductions can give the same spectrum with different numerical parameters.
Worked Diagnostics
Section titled “Worked Diagnostics”Closed-shell polar diatomic
Section titled “Closed-shell polar diatomic”For a molecule with one quadrupolar nucleus:
- , so electronic spin–orbit, electron spin–spin, electronic spin–rotation, Fermi-contact, and electron–nuclear dipolar terms vanish in the isolated-state model;
- rotation, nuclear electric quadrupole, and nuclear spin–rotation remain;
- a static electric field can mix opposite-parity rotational states through ;
- at zero field, coupling is useful when the retained hyperfine Hamiltonian is rotationally invariant.
“Closed shell” therefore does not mean “no hyperfine structure.”
Exercises
Section titled “Exercises”Count the nuclear repulsion once
Section titled “Count the nuclear repulsion once”A program reports the eigenvalue of
as at one geometry. A script then adds to obtain the potential. Identify the error and the reported value that should enter the leading nuclear Hamiltonian.
Solution
Because is already inside , its eigenvalue is already the surface value in this convention. Adding again double counts internuclear repulsion. The leading nuclear Hamiltonian should use
If the electronic operator had excluded , then adding it once would have been required.
Expose rotation–vibration coupling
Section titled “Expose rotation–vibration coupling”Expand the diatomic centrifugal factor through second order in . Identify the terms that couple vibration to rotation.
Solution
Using ,
Therefore,
Here is an energy, unlike the frequency-valued used in the rotor section. The constant term is the equilibrium rigid rotor. The terms proportional to , , and higher powers are explicit rotation–vibration couplings.
Leading isotope scaling
Section titled “Leading isotope scaling”Two isotopologues have reduced masses and . Assuming the same Born–Oppenheimer surface and equilibrium geometry, find and .
Solution
The harmonic frequency scales as , while the rotational constant scales as :
and
These are leading mass laws, not exact high-precision isotope identities.
Nuclear spin–rotation in a closed shell
Section titled “Nuclear spin–rotation in a closed shell”In a diatomic with one spin- nucleus, let , where is an energy. Find the shifts for and compare with .
Solution
Electronic spin–rotation vanishes because , but nuclear spin remains. For , the values have energies
The respective degeneracies give zero weighted centroid. For , only occurs and this first-order interaction vanishes. Electric-quadrupole and other hyperfine terms are separate contributions.
Perturb or diagonalize
Section titled “Perturb or diagonalize”Two same-symmetry rovibronic levels are separated by and coupled by . Is nondegenerate perturbation theory reliable?
Solution
The mixing criterion is
This is not small. The mixing angle satisfies
The eigenvalue separation is , and the lower state has weight in the upper unperturbed level. Both levels belong in the retained model space and the block should be diagonalized. Calling the coupling “only a few megahertz” is irrelevant without comparing it with the allowed-state gap.
References
Section titled “References”- Brown, J. M., and A. Carrington. Rotational Spectroscopy of Diatomic Molecules. Cambridge University Press, 2003. DOI.
- Dunham, J. L. “The Energy Levels of a Rotating Vibrator.” Physical Review 41, 721–731 (1932). DOI.
- National Institute of Standards and Technology. Diatomic Spectral Database: singlet-Sigma ground states and triplet-Sigma ground states. Operator conventions and evaluated constants; accessed 14 October 2026.